linear regression

Linear regression

[1] ""
[1] "-----resp1 and resp2"
p12019 p13881    pall     qall
rs4946514 0.00566 0.0183 4.9e-05 0.000945
p12019 p13881     pall     qall
rs4946514  0.00566 0.0183 0.000049 0.000945
rs1934632  0.33406 0.0163 0.000258 0.001892
rs10863854 0.33704 0.0163 0.000294 0.001892
rs1934626  0.33262 0.0603 0.004931 0.023770
rs8021893  0.36013 0.0748 0.007678 0.027420
rs3813437  0.06367 0.1076 0.009607 0.027420
rs1317255  0.58202 0.0787 0.009955 0.027420
rs1934633  0.58538 0.0787 0.011499 0.027712
rs11590447 0.21793 0.1076 0.013921 0.028690
rs11120986 0.22251 0.1076 0.014881 0.028690
[1] ""
[1] "-----twbc1 and twbc2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019  p13881    pall  qall
rs11994137 0.00754 0.11935 0.00843 0.152
rs16882778 0.00850 0.11935 0.00936 0.152
rs9429328  0.00438 0.38810 0.01376 0.152
rs10434944 0.55585 0.00431 0.01739 0.152
rs2463460  0.00408 0.86010 0.02005 0.152
rs7197684  0.01017 0.65459 0.03840 0.185
rs10798738 0.32148 0.01924 0.04178 0.185
rs10271646 0.61609 0.01313 0.04429 0.185
rs10241173 0.89424 0.01313 0.04852 0.185
rs11120989 0.07202 0.09951 0.04873 0.185
[1] ""
[1] "-----thgb1 and thgb2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019   p13881    pall   qall
rs10798738 0.1388 0.000738 0.00248 0.0825
rs10271646 0.0126 0.203671 0.02006 0.2647
rs10434944 0.8602 0.008577 0.02668 0.2647
rs6973410  0.0134 0.483187 0.03936 0.2647
rs6691275  0.2119 0.030941 0.04708 0.2647
rs7134205  0.5373 0.015264 0.05073 0.2647
rs2250910  0.6368 0.016720 0.06148 0.2647
rs11669028 0.1245 0.119283 0.08096 0.2647
rs11587056 0.1852 0.071636 0.08099 0.2647
rs10241173 0.0661 0.203671 0.08192 0.2647
[1] ""
[1] "-----tplt1 and tplt2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019  p13881    pall   qall
rs6870861  0.70463 0.00518 0.00310 0.0521
rs2551038  0.51618 0.00518 0.00426 0.0521
rs7134205  0.06731 0.01811 0.00447 0.0521
rs6872533  0.85295 0.00518 0.00492 0.0521
rs10434944 0.69144 0.00851 0.00555 0.0521
rs1649942  0.44185 0.01161 0.00998 0.0780
rs16882778 0.00830 0.30535 0.02724 0.1328
rs1398281  0.04628 0.10223 0.02731 0.1328
rs8021893  0.65432 0.02684 0.02817 0.1328
rs11994137 0.00878 0.30535 0.02830 0.1328
[1] ""
[1] "-----tanc1 and tanc2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019 p13881   pall  qall
rs2463460  0.00233 0.7516 0.0131 0.521
rs9429328  0.02347 0.1225 0.0225 0.521
rs10434944 0.23557 0.0377 0.0452 0.521
rs2551038  0.11110 0.0894 0.0597 0.521
rs7134205  0.29028 0.0429 0.0613 0.521
rs2250910  0.21582 0.0622 0.0715 0.521
rs10798738 0.36856 0.0597 0.0890 0.521
rs10241173 0.27446 0.0664 0.0893 0.521
rs7098297  0.17447 0.1106 0.0984 0.521
rs17467610 0.03265 0.6213 0.1026 0.521

proportional odds logistic regression

proportional odds logistic regression

[1] ""
[1] "-----resp1 and resp2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019 p13881     pall    qall
rs1934632  0.8157 0.0337 0.000230 0.00432
rs10863854 0.8124 0.0337 0.000249 0.00432
rs4946514  0.1510 0.0260 0.003979 0.03996
rs8021893  0.0985 0.1251 0.006291 0.03996
rs3813437  0.1198 0.1101 0.007889 0.03996
rs11590447 0.1478 0.1101 0.008099 0.03996
rs11120986 0.1472 0.1101 0.008384 0.03996
rs11587056 0.1498 0.1101 0.009217 0.03996
rs7519687  0.4270 0.1101 0.012985 0.05004
rs1934626  0.8071 0.1251 0.014763 0.05030
[1] ""
[1] "-----twbc1 and twbc2"
p12019 p13881   pall   qall
rs9429328 0.0150 0.0369 0.0117 0.0407
p12019  p13881    pall   qall
rs11994137 0.00589 0.10460 0.00245 0.0147
rs16882778 0.00622 0.10460 0.00265 0.0147
rs9429328  0.01503 0.03689 0.01174 0.0407
rs10798738 0.32392 0.01827 0.01472 0.0407
rs7197684  0.00549 0.49408 0.01940 0.0429
rs11120989 0.03439 0.18783 0.02826 0.0502
rs7134205  0.33881 0.00284 0.03494 0.0502
rs2463460  0.00535 0.99993 0.03689 0.0502
rs3751803  0.07388 0.10460 0.04087 0.0502
rs7867305  0.23608 0.05348 0.04579 0.0506
[1] ""
[1] "-----thgb1 and thgb2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019   p13881     pall    qall
rs10798738 0.26391 0.000279 5.01e-05 0.00195
rs633280   0.75176 0.023558 1.42e-02 0.18566
rs2250910  0.70816 0.026157 1.67e-02 0.18566
rs10271646 0.01116 0.170033 2.05e-02 0.18566
rs1398281  0.00747 0.559424 2.74e-02 0.18566
rs7867305  0.05931 0.057104 2.86e-02 0.18566
rs6973410  0.00940 0.559424 4.09e-02 0.22773
rs11669028 0.52399 0.020350 5.77e-02 0.28073
rs6691275  0.40797 0.058301 7.02e-02 0.30353
rs7519687  0.61042 0.058301 8.61e-02 0.32282
[1] ""
[1] "-----tplt1 and tplt2"
p12019 p13881    pall  qall
rs7134205 0.0310 0.0384 0.00888 0.115
p12019  p13881    pall  qall
rs7134205  0.03104 0.03837 0.00888 0.115
rs2551038  0.46418 0.00563 0.01196 0.115
rs6870861  0.78226 0.00563 0.01232 0.115
rs6872533  0.65253 0.00563 0.01421 0.115
rs1426897  0.11996 0.04167 0.02674 0.148
rs1398281  0.14305 0.03696 0.02815 0.148
rs7519687  0.00742 0.79520 0.03208 0.148
rs16882778 0.03559 0.15603 0.04312 0.166
rs11994137 0.03871 0.15603 0.04616 0.166
rs10863854 0.38567 0.03913 0.05968 0.193
[1] ""
[1] "-----tanc1 and tanc2"
[1] p12019 p13881 pall   qall  
<0 rows> (or 0-length row.names)
p12019 p13881   pall  qall
rs11669028 0.03672 0.0828 0.0252 0.235
rs2463460  0.00737 0.9530 0.0337 0.235
rs10798738 0.38750 0.0183 0.0357 0.235
rs7134205  0.37458 0.0347 0.0502 0.235
rs2551038  0.07542 0.1092 0.0510 0.235
rs7867305  0.72487 0.0253 0.0650 0.235
rs11120989 0.07055 0.1385 0.0656 0.235
rs9429328  0.57531 0.0355 0.0699 0.235
rs2250910  0.25919 0.0549 0.0754 0.235
rs11994137 0.13532 0.1046 0.0911 0.235